PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G2607
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 284aa    MW: 31678.4 Da    PI: 8.0426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G2607genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
      Gh_D05G2607 14 KGAWTKEEDQRLIDYIRLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding55.61.2e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++ Edel+++++ +lG++ W++Ia++++ gRt++++k++w+++
      Gh_D05G2607  67 RGNFSEAEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.586961IPR017930Myb domain
SMARTSM007174.9E-141363IPR001005SANT/Myb domain
SuperFamilySSF466895.39E-2913108IPR009057Homeodomain-like
PfamPF002493.9E-161461IPR001005SANT/Myb domain
CDDcd001671.36E-111661No hitNo description
PROSITE profilePS5129428.45262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-2865117IPR009057Homeodomain-like
SMARTSM007172.5E-1766114IPR001005SANT/Myb domain
PfamPF002493.2E-1667111IPR001005SANT/Myb domain
CDDcd001678.54E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SEAEDELIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLISRG  120
IDPQTHGPLN QPTNTNKSTE LDFRNVPKAS KSNFAPNPSR DFNFNEFQVK AKAESIEEGT  180
SSSSGMTTDE EQQQEEEQDK YAGNSQELDL ELSIGISSSG KNNNSTGVST ANSAESKPLL  240
DKSNFQFLGQ AMAAKAVCLC CQLGFGTSEI CRNCQSTNGF NTYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.12360.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4217950.0EF421795.1 Gossypium hirsutum MYB8 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446914.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ388513e-98MYB6_ARATH; Transcription repressor MYB6
TrEMBLB1N7Z60.0B1N7Z6_G
STRINGPOPTR_0013s11360.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.19e-90myb domain protein 3